miRBase entry: pal-mir-544

Stem-loop pal-mir-544


Accession
MI0032553
Description
Pteropus alecto pal-mir-544 precursor miRNA


Sequence

UCUUGUUAAAAGGCAGAUUCUgauucagggaccaagAUUCUGCAUUUUUAGCAAGUU
.((((((((((((((((.(((.............))).))))).)))))))))))..

Structure
-U           -     U   gauuc 
  CUUGUUAAAAG GCAGA UCU     a
  ||||||||||| ||||| |||     g
  GAACGAUUUUU CGUCU Aga     g
UU           A     U   accag 


Annotation confidence Not enough data
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Genome context
KB031153.1: 22091066-22091122 [+]
Clustered miRNAs
14 other miRNAs are < 10 kb from pal-mir-544
Name Accession Chromosome Start End Strand Confidence




Database links

Mature pal-miR-544-5p

Accession MIMAT0040211
Description Pteropus alecto pal-miR-544-5p mature miRNA
Sequence 1 - UCUUGUUAAAAGGCAGAUUCU - 21
Evidence experimental
Illumina [1]

Mature pal-miR-544-3p

Accession MIMAT0040212
Description Pteropus alecto pal-miR-544-3p mature miRNA
Sequence 37 - AUUCUGCAUUUUUAGCAAGUU - 57
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25128405
    Characterisation of novel microRNAs in the Black flying fox (Pteropus alecto) by deep sequencing
    Cowled C, Stewart CR, Likic VA, Friedländer MR, Tachedjian M, Jenkins KA, Tizard ML, Cottee P, Marsh GA, Zhou P, Baker ML, Bean AG, Wang LF
    BMC Genomics (2014) 15:682