miRBase entry: pal-mir-543

Stem-loop pal-mir-543


Accession
MI0032557
Description
Pteropus alecto pal-mir-543 precursor miRNA


Sequence

GAAGUUGCCCGUGUCUUUUUCGcuuuauuugugacgAAACAUUCGCGGUGCACUUCUU
(((((.(((((((....((((((.........).)))))....))))).)))))))..

Structure
--     U  -     UCUU     - uuu 
  GAAGU GC CCGUG    UUUCG c   a
  ||||| || |||||    ||||| |   u
  CUUCA CG GGCGC    AAAgc g   u
UU     -  U     UUAC     a ugu 


Annotation confidence Not enough data
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Genome context
KB031153.1: 22077011-22077068 [+]
Clustered miRNAs
15 other miRNAs are < 10 kb from pal-mir-543
Name Accession Chromosome Start End Strand Confidence




Database links

Mature pal-miR-543-5p

Accession MIMAT0040218
Description Pteropus alecto pal-miR-543-5p mature miRNA
Sequence 1 - GAAGUUGCCCGUGUCUUUUUCG - 22
Evidence experimental
Illumina [1]

Mature pal-miR-543-3p

Accession MIMAT0040219
Description Pteropus alecto pal-miR-543-3p mature miRNA
Sequence 37 - AAACAUUCGCGGUGCACUUCUU - 58
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25128405
    Characterisation of novel microRNAs in the Black flying fox (Pteropus alecto) by deep sequencing
    Cowled C, Stewart CR, Likic VA, Friedländer MR, Tachedjian M, Jenkins KA, Tizard ML, Cottee P, Marsh GA, Zhou P, Baker ML, Bean AG, Wang LF
    BMC Genomics (2014) 15:682