Stem-loop sequence pal-mir-376b

Accession

MI0032566 (change log)

Description

Pteropus alecto miR-376b stem-loop

Literature search

1 open access papers mention pal-mir-376b
(1 sentences)

Stem-loop

   --      a     u     u   - guga 
5'   guggau uuccu cuaug uua c    u
     |||||| ||||| ||||| ||| |     
3'   uaccua aagga gauac aau g    u
   ug      a     -     u   a auac 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (ASM32557v1; GCA_000325575.1): KB031153.1: 22084768-22084825 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from pal-mir-376b

• pal-mir-543: KB031153.1: 22077011-22077068 [+]
• pal-mir-495: KB031153.1: 22078847-22078904 [+]
• pal-mir-3958: KB031153.1: 22080829-22080884 [+]
• pal-mir-376c: KB031153.1: 22084045-22084102 [+]
• pal-mir-376d: KB031153.1: 22084388-22084445 [+]
• pal-mir-376b: KB031153.1: 22084768-22084825 [+]
• pal-mir-376a: KB031153.1: 22085130-22085185 [+]
• pal-mir-1185: KB031153.1: 22086787-22086846 [+]
• pal-mir-381: KB031153.1: 22088438-22088496 [+]
• pal-mir-487b: KB031153.1: 22088954-22089011 [+]
• pal-mir-889: KB031153.1: 22090283-22090341 [+]
• pal-mir-544: KB031153.1: 22091066-22091122 [+]
• pal-mir-3959: KB031153.1: 22093968-22094021 [+]
• pal-mir-487a: KB031153.1: 22094380-22094437 [+]

Database links

• miRBase Tracker:MI0032566

Mature sequence pal-miR-376b-5p

• Accession: MIMAT0040236
• Sequence: 1 - guggauauuccuucuauguuua - 22
• Evidence: experimental; Illumina [1]

Mature sequence pal-miR-376b-3p

• Accession: MIMAT0040237
• Sequence: 38 - aucauagaggaaaauccaugu - 58
• Evidence: experimental; Illumina [1]

References

1. PMID:25128405 "Characterisation of novel microRNAs in the Black flying fox (Pteropus alecto) by deep sequencing" Cowled C, Stewart CR, Likic VA, Friedlander MR, Tachedjian M, Jenkins KA, Tizard ML, Cottee P, Marsh GA, Zhou P, Baker ML, Bean AG, Wang LF BMC Genomics. 15:682(2014).