miRBase entry: pal-mir-3120

Stem-loop pal-mir-3120


Accession
MI0032577
Description
Pteropus alecto pal-mir-3120 precursor miRNA


Sequence

GCCUGUCUGUGCCUGCUGUACAggugagcggauguucugCACAGCAAGUGUAGACAGGCAG
((((((((((((.((((((.((((...........)))).)))))).))))))))))))..

Structure
--            C      A    ugag 
  GCCUGUCUGUGC UGCUGU CAgg    c
  |||||||||||| |||||| ||||    g
  CGGACAGAUGUG ACGACA gucu    g
GA            A      C    ugua 


Annotation confidence Not enough data
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Genome context
KB030474.1: 15172900-15172960 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from pal-mir-3120
Name Accession Chromosome Start End Strand Confidence




Database links

Mature pal-miR-3120-5p

Accession MIMAT0040257
Description Pteropus alecto pal-miR-3120-5p mature miRNA
Sequence 1 - GCCUGUCUGUGCCUGCUGUACA - 22
Evidence experimental
Illumina [1]

Mature pal-miR-3120-3p

Accession MIMAT0040258
Description Pteropus alecto pal-miR-3120-3p mature miRNA
Sequence 40 - CACAGCAAGUGUAGACAGGCAG - 61
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25128405
    Characterisation of novel microRNAs in the Black flying fox (Pteropus alecto) by deep sequencing
    Cowled C, Stewart CR, Likic VA, Friedländer MR, Tachedjian M, Jenkins KA, Tizard ML, Cottee P, Marsh GA, Zhou P, Baker ML, Bean AG, Wang LF
    BMC Genomics (2014) 15:682