Stem-loop sequence pal-mir-541

Accession

MI0032585 (change log)

Description

Pteropus alecto miR-541 stem-loop

Literature search

1 open access papers mention pal-mir-541
(4 sentences)

Stem-loop

   --aa          c   g --       --  aa 
5'     gggguucugc guc g  ucccacu  gc  a
       |||||||||| ||| |  |||||||  ||  g
3'     cccuaagacg cgg u  aggguga  cg  u
   ucag          -   g gg       ga  cu 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (ASM32557v1; GCA_000325575.1): KB031153.1: 22106842-22106907 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from pal-mir-541

• pal-mir-668: KB031153.1: 22097745-22097805 [+]
• pal-mir-485: KB031153.1: 22097905-22097963 [+]
• pal-mir-323b: KB031153.1: 22098685-22098741 [+]
• pal-mir-154b: KB031153.1: 22102337-22102397 [+]
• pal-mir-377: KB031153.1: 22104473-22104532 [+]
• pal-mir-541: KB031153.1: 22106842-22106907 [+]
• pal-mir-409: KB031153.1: 22107743-22107796 [+]
• pal-mir-412: KB031153.1: 22107880-22107934 [+]
• pal-mir-369: KB031153.1: 22108020-22108075 [+]
• pal-mir-410: KB031153.1: 22108342-22108397 [+]
• pal-mir-656: KB031153.1: 22109090-22109145 [+]

Database links

• miRBase Tracker:MI0032585

Mature sequence pal-miR-541-5p

• Accession: MIMAT0040273
• Sequence: 1 - aagggguucugccgucgguc - 20
• Evidence: experimental; Illumina [1]

Mature sequence pal-miR-541-3p

• Accession: MIMAT0040274
• Sequence: 48 - ugggcgcagaaucccgacu - 66
• Evidence: experimental; Illumina [1]

References

1. PMID:25128405 "Characterisation of novel microRNAs in the Black flying fox (Pteropus alecto) by deep sequencing" Cowled C, Stewart CR, Likic VA, Friedlander MR, Tachedjian M, Jenkins KA, Tizard ML, Cottee P, Marsh GA, Zhou P, Baker ML, Bean AG, Wang LF BMC Genomics. 15:682(2014).