miRBase entry: pal-mir-1249

Stem-loop pal-mir-1249


Accession
MI0032631
Description
Pteropus alecto pal-mir-1249 precursor miRNA


Sequence

AGGAGGGAGGAGAUGGGCCAAGuucccucugccuggaACGCCCUUCCCCCCCUUCUUC
(((((((.((.((.((((...(((((........))))))))).)).)))))))))..

Structure
--       A  A  U    CAA     cuc 
  AGGAGGG GG GA GGGC   Guucc   u
  ||||||| || || ||||   |||||    
  UCUUCCC CC CU CCCG   CAagg   g
CU       -  C  U    ---     ucc 


Annotation confidence Not enough data
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Genome context
KB030944.1: 785333-785390 [+]

Database links

Mature pal-miR-1249-5p

Accession MIMAT0040361
Description Pteropus alecto pal-miR-1249-5p mature miRNA
Sequence 1 - AGGAGGGAGGAGAUGGGCCAAG - 22
Evidence experimental
Illumina [1]

Mature pal-miR-1249-3p

Accession MIMAT0040362
Description Pteropus alecto pal-miR-1249-3p mature miRNA
Sequence 38 - ACGCCCUUCCCCCCCUUCUUC - 58
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25128405
    Characterisation of novel microRNAs in the Black flying fox (Pteropus alecto) by deep sequencing
    Cowled C, Stewart CR, Likic VA, Friedländer MR, Tachedjian M, Jenkins KA, Tizard ML, Cottee P, Marsh GA, Zhou P, Baker ML, Bean AG, Wang LF
    BMC Genomics (2014) 15:682