miRBase entry: pal-mir-656

Stem-loop pal-mir-656


Accession
MI0032634
Description
Pteropus alecto pal-mir-656 precursor miRNA


Sequence

AGGUUGCCUGUGAGGUGUUCAcuuucuauaugaugAAUAUUAUACAGUCAACCUCU
((((((.(((((.((((((((...((.....)))))))))).))))).))))))..

Structure
--      C     A        cuu  u 
  AGGUUG CUGUG GGUGUUCA   uc a
  |||||| ||||| ||||||||   || u
  UCCAAC GACAU UUAUAAgu   ag a
UC      U     A        ---  u 


Annotation confidence Not enough data
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Genome context
KB031153.1: 22109090-22109145 [+]
Clustered miRNAs
7 other miRNAs are < 10 kb from pal-mir-656
Name Accession Chromosome Start End Strand Confidence




Database links

Mature pal-miR-656-5p

Accession MIMAT0040367
Description Pteropus alecto pal-miR-656-5p mature miRNA
Sequence 1 - AGGUUGCCUGUGAGGUGUUCA - 21
Evidence experimental
Illumina [1]

Mature pal-miR-656-3p

Accession MIMAT0040368
Description Pteropus alecto pal-miR-656-3p mature miRNA
Sequence 36 - AAUAUUAUACAGUCAACCUCU - 56
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25128405
    Characterisation of novel microRNAs in the Black flying fox (Pteropus alecto) by deep sequencing
    Cowled C, Stewart CR, Likic VA, Friedländer MR, Tachedjian M, Jenkins KA, Tizard ML, Cottee P, Marsh GA, Zhou P, Baker ML, Bean AG, Wang LF
    BMC Genomics (2014) 15:682