miRBase entry: pal-mir-1839

Stem-loop pal-mir-1839


Accession
MI0032650
Description
Pteropus alecto pal-mir-1839 precursor miRNA


Sequence

UCGGGGGCCAUACUACGUAGCCUGGAgcaggugagggcaaggagagccagggcgAAGGGGCUAGUGUGGAAGAGC
.......(((((((....(((((...((.......(((.......)))...))....))))))))))))......

Structure
UCGGGGG       ACGU     -GGA  aggugag   aa 
       CCAUACU    AGCCU    gc       ggc  g
       |||||||    |||||    ||       |||  g
       GGUGUGA    UCGGG    cg       ccg  a
-CGAGAA       ----     GAAg  ----gga   ag 


Annotation confidence Not enough data
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Genome context
KB030715.1: 5553771-5553845 [-]

Database links

Mature pal-miR-1839-5p

Accession MIMAT0040396
Description Pteropus alecto pal-miR-1839-5p mature miRNA
Sequence 1 - UCGGGGGCCAUACUACGUAGCCUGGA - 26
Evidence experimental
Illumina [1]

Mature pal-miR-1839-3p

Accession MIMAT0040397
Description Pteropus alecto pal-miR-1839-3p mature miRNA
Sequence 55 - AAGGGGCUAGUGUGGAAGAGC - 75
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25128405
    Characterisation of novel microRNAs in the Black flying fox (Pteropus alecto) by deep sequencing
    Cowled C, Stewart CR, Likic VA, Friedländer MR, Tachedjian M, Jenkins KA, Tizard ML, Cottee P, Marsh GA, Zhou P, Baker ML, Bean AG, Wang LF
    BMC Genomics (2014) 15:682