miRBase entry: hpo-let-7

Stem-loop hpo-let-7


Accession
MI0032678
Description
Heligmosomoides polygyrus hpo-let-7 precursor miRNA

Literature search
2 open access papers mention hpo-let-7
(4 sentences)

Sequence

UGAGGUAGUAGGUUGUAUAGUUcagcguggcaucaucaggugaaaCUAUUACAACUUGCUAGCUUGC
.(((.(((((((((((((((((..((.(((.....))).))..))))).)))))))))))).)))..

Structure
-U   G            -     ca  g   c 
  GAG UAGUAGGUUGUA UAGUU  gc ugg a
  ||| |||||||||||| |||||  || ||| u
  UUC AUCGUUCAACAU AUCaa  ug acu c
CG   G            U     ag  g   a 


Annotation confidence Not enough data
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Genome context
HpolyGenome23022012_contig_232277: 902-968 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from hpo-let-7
Name Accession Chromosome Start End Strand Confidence




Database links

Mature hpo-let-7-5p

Accession MIMAT0040442
Description Heligmosomoides polygyrus hpo-let-7-5p mature miRNA
Sequence 1 - UGAGGUAGUAGGUUGUAUAGUU - 22
Evidence experimental
Illumina [1]

Mature hpo-let-7-3p

Accession MIMAT0040443
Description Heligmosomoides polygyrus hpo-let-7-3p mature miRNA
Sequence 46 - CUAUUACAACUUGCUAGCUUGC - 67
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25421927
    Exosomes secreted by nematode parasites transfer small RNAs to mammalian cells and modulate innate immunity
    Buck AH, Coakley G, Simbari F, McSorley HJ, Quintana JF, Le Bihan T, Kumar S, Abreu-Goodger C, Lear M, Harcus Y, Ceroni A, Babayan SA, Blaxter M, Ivens A, Maizels RM
    Nat Commun (2014) 5:5488