miRBase entry: hpo-mir-5899b

Stem-loop hpo-mir-5899b

Accession

MI0032687

Description

Heligmosomoides polygyrus hpo-mir-5899b precursor miRNA

Sequence

CGGCUAUGUACUGCGUGUGUAcuguuguucugauaUACCCGUAGCCACAUAGUUCGCA
.((((((((.(((((.((((((.........).))))).)))))..))))))))....

Structure

---C        -A     U     - ugu 
    GGCUAUGU  CUGCG GUGUA c   u
    ||||||||  ||||| ||||| |   g
    UUGAUACA  GAUGC CAUau g   u
ACGC        CC     C     a ucu

Annotation confidence Not enough data

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Genome context

HpolyGenome23022012_contig_222843: 4950-5007 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from hpo-mir-5899b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature hpo-miR-5899b-5p

Accession	MIMAT0040460
Description	Heligmosomoides polygyrus hpo-miR-5899b-5p mature miRNA
Sequence	1 - CGGCUAUGUACUGCGUGUGUA - 21
Evidence	experimental Illumina [1]

Mature hpo-miR-5899b-3p

Accession	MIMAT0040461
Description	Heligmosomoides polygyrus hpo-miR-5899b-3p mature miRNA
Sequence	36 - UACCCGUAGCCACAUAGUUCGCA - 58
Evidence	experimental Illumina [1]

References

PubMed ID: 25421927
Exosomes secreted by nematode parasites transfer small RNAs to mammalian cells and modulate innate immunity
Buck AH, Coakley G, Simbari F, McSorley HJ, Quintana JF, Le Bihan T, Kumar S, Abreu-Goodger C, Lear M, Harcus Y, Ceroni A, Babayan SA, Blaxter M, Ivens A, Maizels RM
Nat Commun (2014) 5:5488