miRBase entry: hpo-mir-54b

Stem-loop hpo-mir-54b

Accession

MI0032691

Description

Heligmosomoides polygyrus hpo-mir-54b precursor miRNA

Sequence

CGAUUAUGAGAUGACUGGUGCAuguugagauuugUACCCGUAAUCUUCAUAGUCCGA
.(((((((((((.((.((((((..........)))))).)).))).))))))))...

Structure

--C        -   G  U      uguu 
   GAUUAUGA GAU AC GGUGCA    g
   |||||||| ||| || ||||||     
   CUGAUACU CUA UG CCAUgu    a
AGC        U   A  C      uuag

Annotation confidence Not enough data

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Genome context

HpolyGenome23022012_contig_144429: 211-267 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from hpo-mir-54b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature hpo-miR-54b-5p

Accession	MIMAT0040468
Description	Heligmosomoides polygyrus hpo-miR-54b-5p mature miRNA
Sequence	1 - CGAUUAUGAGAUGACUGGUGCA - 22
Evidence	experimental Illumina [1]

Mature hpo-miR-54b-3p

Accession	MIMAT0040469
Description	Heligmosomoides polygyrus hpo-miR-54b-3p mature miRNA
Sequence	35 - UACCCGUAAUCUUCAUAGUCCGA - 57
Evidence	experimental Illumina [1]

References

PubMed ID: 25421927
Exosomes secreted by nematode parasites transfer small RNAs to mammalian cells and modulate innate immunity
Buck AH, Coakley G, Simbari F, McSorley HJ, Quintana JF, Le Bihan T, Kumar S, Abreu-Goodger C, Lear M, Harcus Y, Ceroni A, Babayan SA, Blaxter M, Ivens A, Maizels RM
Nat Commun (2014) 5:5488