miRBase entry: hpo-mir-63b

Stem-loop hpo-mir-63b


Accession
MI0032694
Description
Heligmosomoides polygyrus hpo-mir-63b precursor miRNA

Literature search
1 open access papers mention hpo-mir-63b
(3 sentences)

Sequence

UCCUGUUCGCCAGUCGUCAUUGUcuuugcguguacUAUGACACUGUUGCGAAUUGGG
.((.((((((((((.(((((.(((.......).)).)))))))))..)))))).)).

Structure
U  U      --    C     U  - uu 
 CC GUUCGC  CAGU GUCAU GU c  u
 || ||||||  |||| ||||| || |  g
 GG UAAGCG  GUCA CAGUA ca g  c
G  U      UU    -     U  u ug 


Annotation confidence Not enough data
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Genome context
HpolyGenome23022012_contig_234356: 1079-1135 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from hpo-mir-63b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature hpo-miR-63b-5p

Accession MIMAT0040474
Description Heligmosomoides polygyrus hpo-miR-63b-5p mature miRNA
Sequence 1 - UCCUGUUCGCCAGUCGUCAUUGU - 23
Evidence experimental
Illumina [1]

Mature hpo-miR-63b-3p

Accession MIMAT0040475
Description Heligmosomoides polygyrus hpo-miR-63b-3p mature miRNA
Sequence 36 - UAUGACACUGUUGCGAAUUGGG - 57
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25421927
    Exosomes secreted by nematode parasites transfer small RNAs to mammalian cells and modulate innate immunity
    Buck AH, Coakley G, Simbari F, McSorley HJ, Quintana JF, Le Bihan T, Kumar S, Abreu-Goodger C, Lear M, Harcus Y, Ceroni A, Babayan SA, Blaxter M, Ivens A, Maizels RM
    Nat Commun (2014) 5:5488