miRBase entry: hpo-mir-250

Stem-loop hpo-mir-250


Accession
MI0032701
Description
Heligmosomoides polygyrus hpo-mir-250 precursor miRNA


Sequence

CCGGCAGUUGCCUCGUGAUCCGugaucaguagaUCGAAUCACAGCCAACUGCUGCU
.(((((((((.((.(((((...(((((....))))).))))))).)))))))))..

Structure
-C         C  C     CCG     a 
  CGGCAGUUG CU GUGAU   ugauc g
  ||||||||| || |||||   |||||  
  GUCGUCAAC GA CACUA   GCUag u
UC         C  -     --A     a 


Annotation confidence Not enough data
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Genome context
HpolyGenome23022012_contig_43338: 3014-3069 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from hpo-mir-250
Name Accession Chromosome Start End Strand Confidence




Database links

Mature hpo-miR-250-5p

Accession MIMAT0040488
Description Heligmosomoides polygyrus hpo-miR-250-5p mature miRNA
Sequence 1 - CCGGCAGUUGCCUCGUGAUCCG - 22
Evidence experimental
Illumina [1]

Mature hpo-miR-250-3p

Accession MIMAT0040489
Description Heligmosomoides polygyrus hpo-miR-250-3p mature miRNA
Sequence 34 - UCGAAUCACAGCCAACUGCUGCU - 56
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25421927
    Exosomes secreted by nematode parasites transfer small RNAs to mammalian cells and modulate innate immunity
    Buck AH, Coakley G, Simbari F, McSorley HJ, Quintana JF, Le Bihan T, Kumar S, Abreu-Goodger C, Lear M, Harcus Y, Ceroni A, Babayan SA, Blaxter M, Ivens A, Maizels RM
    Nat Commun (2014) 5:5488