miRBase entry: hpo-mir-50

Stem-loop hpo-mir-50


Accession
MI0032706
Description
Heligmosomoides polygyrus hpo-mir-50 precursor miRNA


Sequence

UGAUAUGUCUGGUAUUCUUGGGUUucauugacaaCCAGAACUAUUAGACAUAUCGAA
((((((((((((((((((..((((........)))))))).))))))))))))))..

Structure
--              -    UG    uca 
  UGAUAUGUCUGGUA UUCU  GGUU   u
  |||||||||||||| ||||  ||||    
  GCUAUACAGAUUAU AAGA  CCaa   u
AA              C    --    cag 


Annotation confidence Not enough data
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Genome context
HpolyGenome23022012_contig_109792: 2107-2163 [+]

Database links

Mature hpo-miR-50-5p

Accession MIMAT0040498
Description Heligmosomoides polygyrus hpo-miR-50-5p mature miRNA
Sequence 1 - UGAUAUGUCUGGUAUUCUUGGGUU - 24
Evidence experimental
Illumina [1]

Mature hpo-miR-50-3p

Accession MIMAT0040499
Description Heligmosomoides polygyrus hpo-miR-50-3p mature miRNA
Sequence 35 - CCAGAACUAUUAGACAUAUCGAA - 57
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25421927
    Exosomes secreted by nematode parasites transfer small RNAs to mammalian cells and modulate innate immunity
    Buck AH, Coakley G, Simbari F, McSorley HJ, Quintana JF, Le Bihan T, Kumar S, Abreu-Goodger C, Lear M, Harcus Y, Ceroni A, Babayan SA, Blaxter M, Ivens A, Maizels RM
    Nat Commun (2014) 5:5488