Stem-loop hpo-mir-5352

Accession

MI0032733

Description

Heligmosomoides polygyrus hpo-mir-5352 precursor miRNA

Sequence

CAGGCGUGCUCGUUGUGCAUUGugggucugaucaUUGCACAUGAUGUACGACCUGCA
(((((((((((((.(((((..((((......))))))))))))).))))).))))..

Structure

--    -     -    U     UU    gu 
  CAGG CGUGC UCGU GUGCA  Gugg  c
  |||| ||||| |||| |||||  ||||   
  GUCC GCAUG AGUA CACGU  Uacu  u
AC    A     U    -     --    ag 

Annotation confidence Not enough data

Genome context

HpolyGenome23022012_contig_12817: 420-476 [+]

Clustered miRNAs

3 other miRNAs are < 10 kb from hpo-mir-5352

Mature hpo-miR-5352-5p

• Accession: MIMAT0040552
• Description: Heligmosomoides polygyrus hpo-miR-5352-5p mature miRNA
• Sequence: 1 - CAGGCGUGCUCGUUGUGCAUUG - 22
• Evidence: experimental ; Illumina [1]

Mature hpo-miR-5352-3p

• Accession: MIMAT0040553
• Description: Heligmosomoides polygyrus hpo-miR-5352-3p mature miRNA
• Sequence: 35 - UUGCACAUGAUGUACGACCUGCA - 57
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25421927
   Exosomes secreted by nematode parasites transfer small RNAs to mammalian cells and modulate innate immunity
   Buck AH, Coakley G, Simbari F, McSorley HJ, Quintana JF, Le Bihan T, Kumar S, Abreu-Goodger C, Lear M, Harcus Y, Ceroni A, Babayan SA, Blaxter M, Ivens A, Maizels RM
   Nat Commun (2014) 5:5488