miRBase entry: hpo-mir-10028

Stem-loop hpo-mir-10028


Accession
MI0032734
Description
Heligmosomoides polygyrus hpo-mir-10028 precursor miRNA


Sequence

cuccgagcccUGACCAUGGACUGAUAGAGGCGcugauaaggcuaucgUUUCCUGUCGGCUCACGGUCAGAgcgaagauag
.((...((.((((((.(((.(((((((.((.((.((((....)))))).))))))))).))).)))))).))...))...

Structure
--c  cga  c      A   A       A  C  u    a 
   uc   gc cUGACC UGG CUGAUAG GG Gc gaua g
   ||   || |||||| ||| ||||||| || || ||||  
   ag   cg GACUGG ACU GGCUGUC CU Ug cuau g
gau  aag  A      C   C       -  U  -    c 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
HpolyGenome23022012_contig_254048: 1443-1522 [+]

Database links

Mature hpo-miR-10028-5p

Accession MIMAT0040554
Description Heligmosomoides polygyrus hpo-miR-10028-5p mature miRNA
Sequence 11 - UGACCAUGGACUGAUAGAGGCG - 32
Evidence experimental
Illumina [1]

Mature hpo-miR-10028-3p

Accession MIMAT0040555
Description Heligmosomoides polygyrus hpo-miR-10028-3p mature miRNA
Sequence 48 - UUUCCUGUCGGCUCACGGUCAGA - 70
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25421927
    Exosomes secreted by nematode parasites transfer small RNAs to mammalian cells and modulate innate immunity
    Buck AH, Coakley G, Simbari F, McSorley HJ, Quintana JF, Le Bihan T, Kumar S, Abreu-Goodger C, Lear M, Harcus Y, Ceroni A, Babayan SA, Blaxter M, Ivens A, Maizels RM
    Nat Commun (2014) 5:5488