miRBase entry: hpo-mir-5906

Stem-loop hpo-mir-5906


Accession
MI0032739
Description
Heligmosomoides polygyrus hpo-mir-5906 precursor miRNA


Sequence

UGGCAAUGAGCUAGCUAAUUGUUccaaaggccaaCAUUAGCUGGUCUAUUGCCAGC
((((((((.((((((((((.(((((...))..))))))))))))).))))))))..

Structure
--        A          U   --  a 
  UGGCAAUG GCUAGCUAAU GUU  cc  
  |||||||| |||||||||| |||  || a
  ACCGUUAU UGGUCGAUUA Caa  gg  
CG        C          -   cc  a 


Annotation confidence Not enough data
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Genome context
HpolyGenome23022012_contig_146954: 633-688 [-]

Database links

Mature hpo-miR-5906-5p

Accession MIMAT0040564
Description Heligmosomoides polygyrus hpo-miR-5906-5p mature miRNA
Sequence 1 - UGGCAAUGAGCUAGCUAAUUGUU - 23
Evidence experimental
Illumina [1]

Mature hpo-miR-5906-3p

Accession MIMAT0040565
Description Heligmosomoides polygyrus hpo-miR-5906-3p mature miRNA
Sequence 35 - CAUUAGCUGGUCUAUUGCCAGC - 56
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25421927
    Exosomes secreted by nematode parasites transfer small RNAs to mammalian cells and modulate innate immunity
    Buck AH, Coakley G, Simbari F, McSorley HJ, Quintana JF, Le Bihan T, Kumar S, Abreu-Goodger C, Lear M, Harcus Y, Ceroni A, Babayan SA, Blaxter M, Ivens A, Maizels RM
    Nat Commun (2014) 5:5488