Stem-loop hpo-mir-40a

Accession

MI0032743

Description

Heligmosomoides polygyrus hpo-mir-40a precursor miRNA

Sequence

CGUUAUAGGAUCUCGUUGAGAcgccugagcgaucUCACCGGGCAUUCCUAUGACGGA
((((((((((.((((.((((((((....))).))))).))))...))))))))))..

Structure

--          --U    U     -   c 
  CGUUAUAGGA   CUCG UGAGA cgc u
  ||||||||||   |||| ||||| |||  
  GCAGUAUCCU   GGGC ACUcu gcg g
AG          UAC    C     a   a 

Annotation confidence Not enough data

Genome context

HpolyGenome23022012_contig_249479: 1047-1103 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from hpo-mir-40a

Mature hpo-miR-40a-5p

• Accession: MIMAT0040572
• Description: Heligmosomoides polygyrus hpo-miR-40a-5p mature miRNA
• Sequence: 1 - CGUUAUAGGAUCUCGUUGAGA - 21
• Evidence: experimental ; Illumina [1]

Mature hpo-miR-40a-3p

• Accession: MIMAT0040573
• Description: Heligmosomoides polygyrus hpo-miR-40a-3p mature miRNA
• Sequence: 35 - UCACCGGGCAUUCCUAUGACGGA - 57
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25421927
   Exosomes secreted by nematode parasites transfer small RNAs to mammalian cells and modulate innate immunity
   Buck AH, Coakley G, Simbari F, McSorley HJ, Quintana JF, Le Bihan T, Kumar S, Abreu-Goodger C, Lear M, Harcus Y, Ceroni A, Babayan SA, Blaxter M, Ivens A, Maizels RM
   Nat Commun (2014) 5:5488