miRBase entry: hpo-mir-40c

Stem-loop hpo-mir-40c

Accession

MI0032752

Description

Heligmosomoides polygyrus hpo-mir-40c precursor miRNA

Sequence

ACUGCAGGAUAUCUCGGUUGAAGcuucuggagacuUCACCGGGAGUUCUGUAGUGA
((((((((((.(((((((.(((((((...))).)))))))))))))))))))))..

Structure

--          A       U    -   c 
  ACUGCAGGAU UCUCGGU GAAG cuu  
  |||||||||| ||||||| |||| ||| u
  UGAUGUCUUG AGGGCCA CUuc gag  
AG          -       -    a   g

Annotation confidence Not enough data

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Genome context

HpolyGenome23022012_contig_26756: 2391-2446 [+]

Clustered miRNAs

4 other miRNAs are < 10 kb from hpo-mir-40c

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature hpo-miR-40c-5p

Accession	MIMAT0040589
Description	Heligmosomoides polygyrus hpo-miR-40c-5p mature miRNA
Sequence	1 - ACUGCAGGAUAUCUCGGUUGAAG - 23
Evidence	experimental Illumina [1]

Mature hpo-miR-40c-3p

Accession	MIMAT0040590
Description	Heligmosomoides polygyrus hpo-miR-40c-3p mature miRNA
Sequence	36 - UCACCGGGAGUUCUGUAGUGA - 56
Evidence	experimental Illumina [1]

References

PubMed ID: 25421927
Exosomes secreted by nematode parasites transfer small RNAs to mammalian cells and modulate innate immunity
Buck AH, Coakley G, Simbari F, McSorley HJ, Quintana JF, Le Bihan T, Kumar S, Abreu-Goodger C, Lear M, Harcus Y, Ceroni A, Babayan SA, Blaxter M, Ivens A, Maizels RM
Nat Commun (2014) 5:5488