miRBase entry: hpo-mir-40g

Stem-loop hpo-mir-40g

Accession

MI0032835

Description

Heligmosomoides polygyrus hpo-mir-40g precursor miRNA

Sequence

CGCUGUAGGACUCCCCGUAGAAGcuccagaagacuUCACCGGGUGUUCUGCGGUCAG
.((((((((((.(((.((.((((((.....)).)))))).))).))))))))))...

Structure

--C          U   C  A    -  c 
   GCUGUAGGAC CCC GU GAAG cu c
   |||||||||| ||| || |||| || a
   UGGCGUCUUG GGG CA CUuc ga g
GAC          U   C  -    a  a

Annotation confidence Not enough data

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Genome context

HpolyGenome23022012_contig_26756: 2606-2662 [+]

Clustered miRNAs

4 other miRNAs are < 10 kb from hpo-mir-40g

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature hpo-miR-40g-5p

Accession	MIMAT0040753
Description	Heligmosomoides polygyrus hpo-miR-40g-5p mature miRNA
Sequence	1 - CGCUGUAGGACUCCCCGUAGAAG - 23
Evidence	experimental Illumina [1]

Mature hpo-miR-40g-3p

Accession	MIMAT0040754
Description	Heligmosomoides polygyrus hpo-miR-40g-3p mature miRNA
Sequence	36 - UCACCGGGUGUUCUGCGGUCAG - 57
Evidence	experimental Illumina [1]

References

PubMed ID: 25421927
Exosomes secreted by nematode parasites transfer small RNAs to mammalian cells and modulate innate immunity
Buck AH, Coakley G, Simbari F, McSorley HJ, Quintana JF, Le Bihan T, Kumar S, Abreu-Goodger C, Lear M, Harcus Y, Ceroni A, Babayan SA, Blaxter M, Ivens A, Maizels RM
Nat Commun (2014) 5:5488