miRBase entry: hpo-mir-10126

Stem-loop hpo-mir-10126

Accession

MI0032874

Description

Heligmosomoides polygyrus hpo-mir-10126 precursor miRNA

Sequence

agcauagccgAGAACCAUUCGCGCUGCACAUUCAacacgagcgguugAAUUGAGCCGCAAUGGUUUUCGgucucggagc
......(((((((((((((((.(((.((.(((((((.......)))))))))))))).)))))))))))))........

Structure

--agcaua             -  C   G  C       ac 
        gccgAGAACCAUU CG GCU CA AUUCAac  g
        ||||||||||||| || ||| || |||||||  a
        ugGCUUUUGGUAA GC CGA GU UAAguug  g
cgaggcuc             C  -   -  -       gc

Annotation confidence Not enough data

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Genome context

HpolyGenome23022012_contig_278211: 534-612 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from hpo-mir-10126

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature hpo-miR-10126-5p

Accession	MIMAT0040831
Description	Heligmosomoides polygyrus hpo-miR-10126-5p mature miRNA
Sequence	11 - AGAACCAUUCGCGCUGCACAUUCA - 34
Evidence	experimental Illumina [1]

Mature hpo-miR-10126-3p

Accession	MIMAT0040832
Description	Heligmosomoides polygyrus hpo-miR-10126-3p mature miRNA
Sequence	48 - AAUUGAGCCGCAAUGGUUUUCG - 69
Evidence	experimental Illumina [1]

References

PubMed ID: 25421927
Exosomes secreted by nematode parasites transfer small RNAs to mammalian cells and modulate innate immunity
Buck AH, Coakley G, Simbari F, McSorley HJ, Quintana JF, Le Bihan T, Kumar S, Abreu-Goodger C, Lear M, Harcus Y, Ceroni A, Babayan SA, Blaxter M, Ivens A, Maizels RM
Nat Commun (2014) 5:5488