miRBase entry: hpo-mir-10156b

Stem-loop hpo-mir-10156b


Accession
MI0032908
Description
Heligmosomoides polygyrus hpo-mir-10156b precursor miRNA


Sequence

uagcaaugacGCUCCUUUGUGCUAUUGUUAUGcacaaaugacacaACAAUAGCACAAAGGAGCGUCAcugccacaau
..(((.(((((((((((((((((((((((.((((....)).)).))))))))))))))))))))))).)))......

Structure
----ua   a                       A  -  c 
      gca ugacGCUCCUUUGUGCUAUUGUU UG ca a
      ||| ||||||||||||||||||||||| || ||  
      cgu ACUGCGAGGAAACACGAUAACAa ac gu a
uaacac   c                       c  a  a 


Annotation confidence Not enough data
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Genome context
HpolyGenome23022012_contig_72958: 1281-1357 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from hpo-mir-10156b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature hpo-miR-10156b-5p

Accession MIMAT0040898
Description Heligmosomoides polygyrus hpo-miR-10156b-5p mature miRNA
Sequence 11 - GCUCCUUUGUGCUAUUGUUAUG - 32
Evidence experimental
Illumina [1]

Mature hpo-miR-10156b-3p

Accession MIMAT0040899
Description Heligmosomoides polygyrus hpo-miR-10156b-3p mature miRNA
Sequence 46 - ACAAUAGCACAAAGGAGCGUCA - 67
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25421927
    Exosomes secreted by nematode parasites transfer small RNAs to mammalian cells and modulate innate immunity
    Buck AH, Coakley G, Simbari F, McSorley HJ, Quintana JF, Le Bihan T, Kumar S, Abreu-Goodger C, Lear M, Harcus Y, Ceroni A, Babayan SA, Blaxter M, Ivens A, Maizels RM
    Nat Commun (2014) 5:5488