Stem-loop gma-MIR10188

Accession

MI0032953

Description

Glycine max gma-MIR10188 precursor miRNA

Sequence

uacaccaggcaguccuaaucugcaaaaucagauauucaaacccagauucaccauuucauguguuuuuucuuccaccauuuuguuguaguaagacucuauguaccuccuagaacuagaaggcaacgauagagggaguagggguuguguuguggcuagguaagacuaucuuugaaauggugauucuagguuuugaaUCUCUGAUUUUGCAGAUAAGGACUaccugguguc
.((((((((.((((((.(((((((((((((((.(((((((((.(((.(((((((((((...(((((.(((.(((((((....((.((.(....((((((((.(((.(((....))).)))..)).))))))..).)).))...)))..))))..))).)))))......))))))))))).))).)).))))))).))))))))))))))).)))))).)))))))).

Structure

u        c      a               u       -  c   u           ---ugu     u   -u    --   uuug  g  g aaga      -  -a   c   g 
 acaccagg aguccu aucugcaaaaucaga auucaaa cc aga ucaccauuuca      guuuu ucu  ccac  cau    uu ua u    cucuau gu  ccu cua a
 |||||||| |||||| ||||||||||||||| ||||||| || ||| |||||||||||      ||||| |||  ||||  |||    || || |    |||||| ||  ||| |||  
 uguggucc UCAGGA UAGACGUUUUAGUCU Uaaguuu gg ucu agugguaaagu      cagaa gga  ggug  gug    gg au a    gagaua ca  gga gau a
c        a      A               C       u  a   u           uucuau     u   uc    uu   -uug  g  g --gg      g  ac   a   c 

Annotation confidence Not enough data

Genome context

chr10: 13443795-13444022 [+]

Mature gma-miR10188

• Accession: MIMAT0040953
• Description: Glycine max gma-miR10188 mature miRNA
• Sequence: 195 - UCUCUGAUUUUGCAGAUAAGGACU - 218
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25465409
   An atlas of soybean small RNAs identifies phased siRNAs from hundreds of coding genes
   "Arikit S, Xia R, Kakrana A, Huang K, Zhai J, Yan Z, Valdes-Lopez O, Prince S, Musket TA, Nguyen HT, Stacey G, Meyers BC"
   "Plant Cell (2014) 26:4584-4601