miRBase entry: gma-MIR10197

Stem-loop gma-MIR10197


Accession
MI0032964
Description
Glycine max gma-MIR10197 precursor miRNA


Sequence

aaaagauaacAUUUUAGAACGACUUUUUCCUuuaaccggucuaaaagguuaaccuuuuagauugguuauaggaaaaaaucguucuaaaaaguauauuauuu
....((((((.(((((((((((.((((((((.((((((((((((((((....)))))))))))))))).)))))))).))))))))))).)).))))....

Structure
aaaa    -  A           C        u                u 
    gaua ac UUUUAGAACGA UUUUUCCU uaaccggucuaaaagg u
    |||| || ||||||||||| |||||||| ||||||||||||||||  
    uuau ug aaaaucuugcu aaaaagga auugguuagauuuucc a
uuua    a  a           a        u                a 


Annotation confidence Not enough data
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Genome context
chr1: 33086656-33086756 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from gma-MIR10197
Name Accession Chromosome Start End Strand Confidence




Database links

Mature gma-miR10197

Accession MIMAT0040964
Description Glycine max gma-miR10197 mature miRNA
Sequence 11 - AUUUUAGAACGACUUUUUCCU - 31
Evidence experimental
Illumina [1-2]

References

  1. PubMed ID: 25747880
    Evolutionary patterns and coevolutionary consequences of MIRNA genes and microRNA targets triggered by multiple mechanisms of genomic duplications in soybean
    "Zhao M, Meyers BC, Cai C, Xu W, Ma J"
    "Plant Cell (2015) 27:546-562

  2. PubMed ID: 25465409
    An atlas of soybean small RNAs identifies phased siRNAs from hundreds of coding genes
    "Arikit S, Xia R, Kakrana A, Huang K, Zhai J, Yan Z, Valdes-Lopez O, Prince S, Musket TA, Nguyen HT, Stacey G, Meyers BC"
    "Plant Cell (2014) 26:4584-4601