miRBase entry: vca-MIR172b

Stem-loop vca-MIR172b


Accession
MI0032991
Description
Vriesea carinata vca-MIR172b precursor miRNA


Sequence

uugcaggugCAGCAUCAUCCAGAUUCACAUaaacuagcuagggcagaaauuuuucugcacugauaugAGAAUCUUGAUGAUGCUGCAUcggcaa
.(((.((((((((((((((.((((((.((((.......(((.((((((....)))))).))).)))).)))))).)))))))))))))).))).

Structure
u   a              C      A    aacuagc   g      a 
 ugc ggugCAGCAUCAUC AGAUUC CAUa       uag gcagaa u
 ||| |||||||||||||| |||||| ||||       ||| ||||||  
 acg cUACGUCGUAGUAG UCUAAG guau       guc cgucuu u
a   g              U      A    ------a   a      u 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature vca-miR172b-5p

Accession MIMAT0041009
Description Vriesea carinata vca-miR172b-5p mature miRNA
Sequence 10 - CAGCAUCAUCCAGAUUCACAU - 30
Evidence experimental
Illumina [1]

Mature vca-miR172b-3p

Accession MIMAT0041010
Description Vriesea carinata vca-miR172b-3p mature miRNA
Sequence 68 - AGAAUCUUGAUGAUGCUGCAU - 88
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23849128
    Identification of potential miRNAs and their targets in Vriesea carinata (Poales, Bromeliaceae)
    "Guzman F, Almerao MP, Korbes AP, Christoff AP, Zanella CM, Bered F, Margis R"
    "Plant Sci (2013) 210:214-223