miRBase entry: vca-MIR10202a

Stem-loop vca-MIR10202a


Accession
MI0032998
Description
Vriesea carinata vca-MIR10202a precursor miRNA


Sequence

acgauccaacccucuaguAAUAAUAAUUCGUUGGGCCCAAACcaucugacauucucgucaguccaaucacacauauagaccaauaucauuauggacccuaguaauaauaauuggguuuaaguauuuuggguuaaugguuUGAACCCAACGAGUUAUUAUUGCUaguggagcgggucgu
(((((((...((.((((((((((((((((((((((..(((((((((((((......)))))..................((((.((.(((.(((((((..............)))))))))))).))))....))))))))..)))))))))))))))))))))).))...)))))))

Structure
       aac  u                      CC        cugacauucucgucaguccaaucacacauauaga    u  c   a       uaguaa 
acgaucc   cc cuaguAAUAAUAAUUCGUUGGG  CAAACcau                                  ccaa au auu uggaccc      u
|||||||   || ||||||||||||||||||||||  ||||||||                                  |||| || ||| |||||||       
ugcuggg   gg gaUCGUUAUUAUUGAGCAACCC  GUuuggua                                  gguu ua uga auuuggg      a
       cga  u                      AA        ------------------------------auug    u  -   -       uuaaua 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature vca-miR10202a-5p

Accession MIMAT0041023
Description Vriesea carinata vca-miR10202a-5p mature miRNA
Sequence 19 - AAUAAUAAUUCGUUGGGCCCAAAC - 42
Evidence experimental
Illumina [1]

Mature vca-miR10202a-3p

Accession MIMAT0041024
Description Vriesea carinata vca-miR10202a-3p mature miRNA
Sequence 140 - UGAACCCAACGAGUUAUUAUUGCU - 163
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23849128
    Identification of potential miRNAs and their targets in Vriesea carinata (Poales, Bromeliaceae)
    "Guzman F, Almerao MP, Korbes AP, Christoff AP, Zanella CM, Bered F, Margis R"
    "Plant Sci (2013) 210:214-223