miRBase entry: eun-MIR172c

Stem-loop eun-MIR172c


Accession
MI0033023
Description
Eugenia uniflora eun-MIR172c precursor miRNA


Sequence

ucguuguuugcgggcGUAGCAUCAUCAAGAUUCACAuguaguuuuugcaucuucccccucgggguaagaucucuugaguucaugguaaaaaucgugggcaagugcaaaagaaacuucccuuggaaguaugAGAAUCUUGAUGAUGCUGCAUcggcaauaaaacga
(((((..((((.((.((((((((((((((((((.(((....((((((((((((((((...)))).))).((....))(((((((((....)))))))))..)))))))))..((((((...))))))))).)))))))))))))))))).)).))))...)))))

Structure
     -gu    g  c                  A   -------------guag         cuucccccucgggguaagaucucuuga         a 
ucguu   uugc gg GUAGCAUCAUCAAGAUUC CAu                 uuuuugcau                           guucauggu a
|||||   |||| || |||||||||||||||||| |||                 |||||||||                           |||||||||  
agcaa   aacg cU CGUCGUAGUAGUUCUAAG gua                 gaaaacgug                           cgggugcua a
     aau    g  A                  A   ugaagguucccuucaaa         -------------------------aa         a 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature eun-miR172c-5p

Accession MIMAT0041070
Description Eugenia uniflora eun-miR172c-5p mature miRNA
Sequence 16 - GUAGCAUCAUCAAGAUUCACA - 36
Evidence experimental
Illumina [1]

Mature eun-miR172c-3p

Accession MIMAT0041071
Description Eugenia uniflora eun-miR172c-3p mature miRNA
Sequence 131 - AGAAUCUUGAUGAUGCUGCAU - 151
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23166775
    Identification of microRNAs from Eugenia uniflora by high-throughput sequencing and bioinformatics analysis
    Guzman F, Almerão MP, Körbes AP, Loss-Morais G, Margis R
    PLoS One (2012) 7:e49811