miRBase entry: eun-MIR10219

Stem-loop eun-MIR10219


Accession
MI0033046
Description
Eugenia uniflora eun-MIR10219 precursor miRNA


Sequence

gaaggcaaggagaugagguggugaugaggauuuugcugcaagaauauucaaaguaguggacaauagUUCAAGUCUAACAACCUCAGCUuugcaguugccgauuuucugucgacaggaugaauuucuagaucucaugaggcugagauuuuuagccuuucuagcuugccaaauagcuacauccucuagcgaacuauccucaucaagacacagaguguguaaguuaauccgaaaacugaaacggcgaaguccaaauagugagauucgagagcacaggucaauauagauaaagcauaucgcccuaugaauuuugugcauauccuugaggaguugugccaaacugguuggguggcuugaaaccauaaagaucagugagcucaaccuauucuuccauacccaaccuaaauaacucgaacccuugccauaccuaagagaggguuguaagacgucauaaacaacaccaagccauaacaauaacuuuuaccucuuuguucuaauugaucauaacuuaauugcaauaucuuauuuauuaccucgccgaguuauucguuuuuagauauuucaauuuguuucacuaaguccuuacuguuuugagacaucucaauuuguuucacuaaguccuuacauucaaauaaaccagcgucuuuuauuuaucugaauagaggaugcuuugaaacaaaucaagauuuuacaaaugaagacucagugacgugaugaauaaaacuuugcaauugauuuaucauuuaaaaggcgaguaggugaagucauucuuacaauuuugugcucauggaacccucuuuugaaaauuuggugaagaacgacaugaauuuggagucuuuucaagaagauagcaacauggaaaaugcuagaaauaggucggacccacuaauuuguacucuucaaggccccuuaguuagaccccuuuguuagacaauggagaugcugaugguuuuaagcuacgcaauaugagacgaagauaauaaguugauggcauaguugccuaaggacaugcucaaaauuuuuagggccaccuuaccaaaaaaagaaaaaaaauuuagggccauaugcuuucccuauauugauaugaagggguuacccaaaugauuagauuauuccugaauuacacauccauuacuguucaugaaaaaugaaucucuaagguuaauauuuuuugcucuaaaaggaaacucaugcucuuaaaucuuacuaagauaccucucgcucuauugccuucgccauuucaauucuuguauaacuggcacacuuugugucuugaugaucguuuguuagagauguauccauucuuggcaagcuaaaaagacuacaaauucucccaaaaugaguuccaaaauucaucgaucgccaaaacauugggcaacuuggcagagUGGAGGUUGUUUGGCUUGAGCUgauguucacugcuuuaguugauggaaccggguguucuucaaagauuaagcaaauuggaguugcugcaaaugauugauaccuuuggucagucuuggguuaauaaaguaaaauccaggauacucucucuauguugaucag
((.((((.(((((.((((((((((........)))))))..........(((((((((((((.(((((((((((.(((((((((.((((((((((((((.(.....((.(((...(((((((((...((.(((((..((..((((.((((((.((((.(((((((((((((.(.((((((.((((((((((.....(((((((((((((((((((((.(((((...(((.((.(((((.(((((((......((((((((((.(((((((((.((((((((((..(((((((((.((((((.((((((((.((((.(((((.(((((((((((((((((.((((.(((((((((((((((..((((.((((.(.((.(((((((((..(((................(((.....((((((....((((((((((((.((.((.(.((((((.............(((.(((.(((((.((((.(((((.((....(((.((((.((((((((((....(((((((((((.((((.(((((.(((((((.((((.((((..((((((((((.((((..((((......(((((((........))))))).))))..))))..............((((((((((((((....)))))))))))))).))))))))))..)))))))).)))))))))))).)))).)))))))))))....)))))))))).)))).)))....))))))).))))))))).))).)))....))))))))).)).))))))))))))......))))))....)))((((...(((..((((((....))))))..)))))))....)))..)).)))))))..)).))))).))))(((.(((((((((...((.....))...)))...........)))))))))..))))))))))))))).)))).................))))..)))))))))).)))))))).)))).))))))))..(((....)))......................)))))).)))))))))..)))))))))).))..(((....)))....((((..(((.(((.(((((...............))))).))).))).)))).....((((....((((((......))))))))))..))))))).))))))))))(((....))).((......))))))))).))))).)).)))..))))).)))))))))))))))))))))..)))))))))))))))).).))..))))))))))).)))).))).))).))))))...))))).))..)))))))))..))).))......).)))))))..))))))).))))))))).))))))))))).)))))))))))))...((((.((...(((((((..(((.......(((((.......))))).....)))..))))))))).))))((((((((((..........)))))))))).)))))))).))))..))..

Structure
--  -a    a     u   ------------------------------------------------------------------------guggugaugaggauuuugcugcaagaauauuc             a           U         A       --       g -uuuuc  u   cag         cua  u     -ga  cu    u   -   c    c           --  a c      c          uaucc                     a     auc   a  c     c       ---------------uccaaa          c       ---------------------------------------------------------------------------------------------------------  g          au         c      ---------------------------------u        u    a     g   -          --    ----------------g    g               ---------------------------------------------------aa    c    a c  -a       -  uc   -------------------------acccaaccuaaauaac   aaccc      --uacc            g  a  c u      caacaccaagcca   c   a     u    c     u  aauu   c    c          uauc           c    c     a       u    u    ca          cuaaguccuuacuguuuugagacaucucaauuuguuucacuaagucc 
  ga  ggca ggaga gag                                                                                                        aaaguaguggaca uagUUCAAGUC AACAACCUC GCUuugc  aguugcc a      ug cga   gaugaauuu   ga cucau   gg  gaga uuu uag cuuu uagcuugccaa  au g uacauc ucuagcgaac     ucaucaagacacagagugugu aguua   cga aa ugaaa ggcgaag                     uagugagauu gagagca                                                                                                         ca gucaauauag  aaagcauau gcccua                                  gaauuuug gcau uccuu agg aguugugcca  aacu                 guug guggcuugaaaccau                                                     agau agug g uc  accuauu cu  cau                                         ucg     uugcca      uaagagaggguu ua ga g cauaaa             uaa aau acuuu accu uuugu cu    gau auaa uuaauugcaa    uuauuuauuac ucgc gaguu uucguuu uaga auuu  auuuguuuca                                               u
  ||  |||| ||||| |||                                                                                                        ||||||||||||| ||||||||||| ||||||||| |||||||  ||||||| |      || |||   |||||||||   || |||||   ||  |||| ||| ||| |||| |||||||||||  || | |||||| ||||||||||     ||||||||||||||||||||| |||||   ||| || ||||| |||||||                     |||||||||| |||||||                                                                                                         || ||||||||||  ||||||||| ||||||                                  |||||||| |||| ||||| ||| ||||||||||  ||||                 |||| |||||||||||||||                                                     |||| |||| | ||  ||||||| ||  |||                                         |||     ||||||      |||||||||||| || || | ||||||             ||| ||| ||||| |||| ||||| ||    ||| |||| ||||||||||    ||||||||||| |||| ||||| ||||||| |||| ||||  ||||||||||                                               u
  cu  uugu ucucu cuc                                                                                                        uuucgucacuugu gUCGAGUUCGG UUGUUGGAG Ugagacg  ucaacgg u      ac gcu   cuacuuaaa   cu gagua   cc  cucu aaa auc gaaa aucgaacgguu  ua c auguag agauuguuug     aguaguucuguguuucacacg ucaau   guu uu acuuu ccgcuuc                     aucauucuaa uucucgu                                                                                                         gu uaguuauauc  uuucguaua cgggau                                  uuuaaaac cgua aggaa ucc uugauacggu  uuga                 uaac caucgaauuuuggua                                                     uuua ucac c ag  uggauaa ga  gua                                         agc     aguggu      guuuucucccaa gu cu c guguuu             auu uua ugaag ugga gagcg ga    uua uauu aguuaacguu    aauaaguagug agug cucag aaguaaa auuu uaga  uaaacaaagu                                               a
ga  ag    a     -   auaggaccuaaaaugaaauaauuggguucugacugguuuccauaguuaguaaacgucguugagguuaaacgaauuagaaacuucuugugggccaagguaguuga             a           U         G       gu       g uacaaa  c   -ag         -ac  u     aaa  --    u   c   a    a           cu  c u      -          ---cu                     g     -au   c  a     a       cguuaucucgcucuccauaga          a       acucaaaggaaaaucucguuuuuuauaauuggaaucucuaaguaaaaaguacuugucauuaccuacacauuaaguccuuauuagauuaguaaacccauuggggaa  a          cc         c      uuaaaaaaaagaaaaaaaccauuccaccgggauu        u    c     -   g          ag    auaauagaagcagagua    g               gucguagagguaacagauuguuuccccagauugauuccccggaacuucucaug    a    - c  gc       a  uc   aaagguacaacgauagaagaacuuuucugagguuuaaguac   -aaga      uuaaaa            g  a  - -      ---------uaac   c   c     -    u     -  aaau   c    u          ucaa           c    a     -       c    -    ac          uucguaggagauaagucuauuuauuuucugcgaccaaauaaacuuac 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature eun-miR10219-5p

Accession MIMAT0041114
Description Eugenia uniflora eun-miR10219-5p mature miRNA
Sequence 67 - UUCAAGUCUAACAACCUCAGCU - 88
Evidence experimental
Illumina [1]

Mature eun-miR10219-3p

Accession MIMAT0041115
Description Eugenia uniflora eun-miR10219-3p mature miRNA
Sequence 1386 - UGGAGGUUGUUUGGCUUGAGCU - 1407
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23166775
    Identification of microRNAs from Eugenia uniflora by high-throughput sequencing and bioinformatics analysis
    Guzman F, Almerão MP, Körbes AP, Loss-Morais G, Margis R
    PLoS One (2012) 7:e49811