miRBase entry: bta-mir-10225b

Stem-loop bta-mir-10225b


Accession
MI0033055
Description
Bos taurus bta-mir-10225b precursor miRNA


Sequence

3296 reads, 66 reads per million, 45 experiments
cugugaccugccaggcacugccuugaaauccccuaaggUCGAGCCUGACAGAUCACACA
.(((((.(((.(((((.(.((((((........)))))).).))))).))).)))))..

Structure
-c     c   c     a u      aaa 
  uguga cug caggc c gccuug   u
  ||||| ||| ||||| | ||||||    
  ACACU GAC GUCCG G Uggaau   c
AC     A   A     A C      ccc 


Annotation confidence Not enough data
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Genome context
chr26: 42980624-42980682 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from bta-mir-10225b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bta-miR-10225b

Accession MIMAT0041127
Description Bos taurus bta-miR-10225b mature miRNA
Sequence 39 - UCGAGCCUGACAGAUCACACA - 59
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25692199
    MicroRNA profiling of the bovine alveolar macrophage response to Mycobacterium bovis infection suggests pathogen survival is enhanced by microRNA regulation of endocytosis and lysosome trafficking
    "Vegh P, Magee DA, Nalpas NC, Bryan K, McCabe MS, Browne JA, Conlon KM, Gordon SV, Bradley DG, MacHugh DE, Lynn DJ"
    "Tuberculosis (Edinb) (2015) 95:60-67