miRBase entry: cgr-mir-200a

Stem-loop cgr-mir-200a


Accession
MI0033057
Description
Cricetulus griseus cgr-mir-200a precursor miRNA


Sequence

5957 reads, 89 reads per million, 6 experiments
gggccucugugggcaucuuaccggacagugcuggauuucuugacuugacucUAACACUGUCUGGUAACGAUGUUcaaaggugaccc
((((.(((.(((((((((((((((((((((.((((..((.......)).)))).))))))))))))).)))))))).))).).)))

Structure
   - c   g        -             c    uu  uu 
ggg c ucu ugggcauc uuaccggacagug ugga  uc  g
||| | ||| |||||||| ||||||||||||| ||||  ||  a
ccc g gga acUUGUAG AAUGGUCUGUCAC AUcu  ag  c
   a u   a        C             A    -c  uu 


Annotation confidence Not enough data
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Genome context
JH001219.1: 152161-152246 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from cgr-mir-200a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cgr-miR-200a

Accession MIMAT0041129
Description Cricetulus griseus cgr-miR-200a mature miRNA
Sequence 52 - UAACACUGUCUGGUAACGAUGUU - 74
Evidence not_experimental

References

  1. PubMed ID: 25689160
    Annotation of additional evolutionary conserved microRNAs in CHO cells from updated genomic data
    "Diendorfer AB, Hackl M, Klanert G, Jadhav V, Reithofer M, Stiefel F, Hesse F, Grillari J, Borth N"
    "Biotechnol Bioeng (2015) 112:1488-1493