miRBase entry: cgr-mir-199a-2

Stem-loop cgr-mir-199a-2


Accession
MI0033082
Description
Cricetulus griseus cgr-mir-199a-2 precursor miRNA


Sequence

27143 reads, 368 reads per million, 6 experiments
uggaagcuucuggagauccugcuccgucgcCCCAGUGUUCAGACUACCUGUUCaggacaaugccguuguacaguagucugcacauugguuagacugggcaagggccagca
.........((((...((((((((.(((...(((((((.((((((((.(((.((((......))..)).))))))))))).)))))))...))).)))).))))))))..

Structure
uggaagcuu    aga    -    c   gcC       U        C   U  --  ac 
         cugg   uccu gcuc guc   CCAGUGU CAGACUAC UGU Ca  gg  a
         ||||   |||| |||| |||   ||||||| |||||||| ||| ||  ||   
         gacc   ggga cggg cag   gguuaca gucugaug aca gu  cc  a
-------ac    ---    a    u   auu       c        -   u  ug  gu 


Annotation confidence Low
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Genome context
JH000079.1: 375502-375611 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from cgr-mir-199a-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cgr-miR-199a

Accession MIMAT0041153
Description Cricetulus griseus cgr-miR-199a mature miRNA
Sequence 31 - CCCAGUGUUCAGACUACCUGUUC - 53
Evidence not_experimental

References

  1. PubMed ID: 25689160
    Annotation of additional evolutionary conserved microRNAs in CHO cells from updated genomic data
    "Diendorfer AB, Hackl M, Klanert G, Jadhav V, Reithofer M, Stiefel F, Hesse F, Grillari J, Borth N"
    "Biotechnol Bioeng (2015) 112:1488-1493