miRBase entry: cgr-mir-30c-1

Stem-loop cgr-mir-30c-1


Accession
MI0033091
Description
Cricetulus griseus cgr-mir-30c-1 precursor miRNA

Literature search
1 open access papers mention cgr-mir-30c-1
(4 sentences)

Sequence

42273 reads, 566 reads per million, 6 experiments
accauguuguaguguguguaaacauccuacacucucagcugugagcucaagguggCUGGGAGAGGGUUGUUUACUCCuucugccaugga
.(((((..((((...(.(((((((.(((...(((((((((....(((...)))))))))))).))).))))))).)...))))))))).

Structure
a     uu    ugu u       u   aca         guga   c 
 ccaug  guag   g guaaaca ccu   cucucagcu    gcu  
 |||||  ||||   | ||||||| |||   |||||||||    ||| a
 gguac  cguc   C CAUUUGU GGG   GAGGGUCgg    ugg  
a     --    uuC U       U   --A         ----   a 


Annotation confidence Low
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Genome context
JH000283.1: 441797-441885 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from cgr-mir-30c-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cgr-miR-30c

Accession MIMAT0041161
Description Cricetulus griseus cgr-miR-30c mature miRNA
Sequence 56 - CUGGGAGAGGGUUGUUUACUCC - 77
Evidence not_experimental

References

  1. PubMed ID: 25689160
    Annotation of additional evolutionary conserved microRNAs in CHO cells from updated genomic data
    "Diendorfer AB, Hackl M, Klanert G, Jadhav V, Reithofer M, Stiefel F, Hesse F, Grillari J, Borth N"
    "Biotechnol Bioeng (2015) 112:1488-1493