miRBase entry: cgr-mir-18b

Stem-loop cgr-mir-18b


Accession
MI0033101
Description
Cricetulus griseus cgr-mir-18b precursor miRNA

Literature search
1 open access papers mention cgr-mir-18b
(1 sentences)

Sequence

5900 reads, 49 reads per million, 6 experiments
ucuuguguUAAGGUGCAUCUAGUGCAGUUAGugaagcagcuuagacucuacugcccuaaaugccccuucucgcacaggc
.(((((((.((((.((((.(((.(((((.(((.(((...)))..)))..))))).))).)))).))))...))))))).

Structure
u       --U    U    C   U     -U   -g   c 
 cuugugu   AAGG GCAU UAG GCAGU  AGu  aag  
 |||||||   |||| |||| ||| |||||  |||  ||| a
 ggacacg   uucc cgua auc cguca  uca  uuc  
c       cuc    c    a   c     uc   ga   g 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
JH000353.1: 898951-899029 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from cgr-mir-18b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cgr-miR-18b

Accession MIMAT0041171
Description Cricetulus griseus cgr-miR-18b mature miRNA
Sequence 9 - UAAGGUGCAUCUAGUGCAGUUAG - 31
Evidence not_experimental

References

  1. PubMed ID: 25689160
    Annotation of additional evolutionary conserved microRNAs in CHO cells from updated genomic data
    "Diendorfer AB, Hackl M, Klanert G, Jadhav V, Reithofer M, Stiefel F, Hesse F, Grillari J, Borth N"
    "Biotechnol Bioeng (2015) 112:1488-1493