Stem-loop egr-mir-61

Accession

MI0033104

Description

Echinococcus granulosus egr-mir-61 precursor miRNA

Literature search

1 open access papers mention egr-mir-61
(3 sentences)

Sequence

guggcCGUGAGGCCCUUUCUUGUGCAUGgauaaugaggggucuuuaagccucgaccaUGACUAGAAAGAGCACUCACAUCCacccc
((((..(((((((.((((((.((.(((((....(((((..........))))).))))))).)))))).)).)))))..))))...

Structure

---    cC     -  C      U  G     auaa     gguc 
   gugg  GUGAG GC CUUUCU GU CAUGg    ugagg    u
   ||||  ||||| || |||||| || |||||    |||||     
   caCC  CACUC CG GAAAGA CA GUacc    gcucc    u
ccc    UA     A  A      U  -     ---a     gaau 

Annotation confidence Not enough data

Genome context

APAU02000003.1: 1828873-1828958 [+]

Mature egr-miR-61-5p

• Accession: MIMAT0041175
• Description: Echinococcus granulosus egr-miR-61-5p mature miRNA
• Sequence: 6 - CGUGAGGCCCUUUCUUGUGCAUG - 28
• Evidence: experimental ; Illumina [1-2]

Mature egr-miR-61-3p

• Accession: MIMAT0041176
• Description: Echinococcus granulosus egr-miR-61-3p mature miRNA
• Sequence: 58 - UGACUAGAAAGAGCACUCACAUCC - 81
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 25656283
   microRNA profiling in the zoonotic parasite Echinococcus canadensis using a high-throughput approach
   Macchiaroli N, Cucher M, Zarowiecki M, Maldonado L, Kamenetzky L, Rosenzvit MC
   Parasit Vectors (2015) 8:83


2. PubMed ID: 25168356
   Genome-wide sequencing of small RNAs reveals a tissue-specific loss of conserved microRNA families in Echinococcus granulosus
   Bai Y, Zhang Z, Jin L, Kang H, Zhu Y, Zhang L, Li X, Ma F, Zhao L, Shi B, Li J, McManus DP, Zhang W, Wang S
   BMC Genomics (2014) 15:736