miRBase entry: egr-mir-10227a

Stem-loop egr-mir-10227a


Accession
MI0033106
Description
Echinococcus granulosus egr-mir-10227a precursor miRNA


Sequence

ggaugUGGCGCUUUCUAACUUUACUGAuagugauuuaucAGUAAAGUCAUAAAUGCACCUCAuuccc
(((((.((.(((((...(((((((((((((....)))))))))))))...))).)).)).)))))..

Structure
--     U  C  -   CUA             u 
  ggaug GG GC UUU   ACUUUACUGAuag g
  ||||| || || |||   |||||||||||||  
  cuuAC CC CG AAA   UGAAAUGAcuauu a
cc     U  A  U   UAC             u 


Annotation confidence Not enough data
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Genome context
APAU02000041.1: 52250-52316 [+]
Clustered miRNAs
5 other miRNAs are < 10 kb from egr-mir-10227a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature egr-miR-10227a-5p

Accession MIMAT0041179
Description Echinococcus granulosus egr-miR-10227a-5p mature miRNA
Sequence 6 - UGGCGCUUUCUAACUUUACUGA - 27
Evidence experimental
Illumina [1]

Mature egr-miR-10227a-3p

Accession MIMAT0041180
Description Echinococcus granulosus egr-miR-10227a-3p mature miRNA
Sequence 40 - AGUAAAGUCAUAAAUGCACCUCA - 62
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25168356
    Genome-wide sequencing of small RNAs reveals a tissue-specific loss of conserved microRNA families in Echinococcus granulosus
    Bai Y, Zhang Z, Jin L, Kang H, Zhu Y, Zhang L, Li X, Ma F, Zhao L, Shi B, Li J, McManus DP, Zhang W, Wang S
    BMC Genomics (2014) 15:736