miRBase entry: egr-mir-2162

Stem-loop egr-mir-2162


Accession
MI0033107
Description
Echinococcus granulosus egr-mir-2162 precursor miRNA

Literature search
1 open access papers mention egr-mir-2162
(1 sentences)

Sequence

ggaugAGUGGAUUUGUUGCAUAUUAUACaucgugggguuugUAUUAUGCAACUUUUCACUCCuacauc
....(((((((...((((((((.((((.(((....))).)))).))))))))..))))))).......

Structure
---ggau       UUU        U    C   g 
       gAGUGGA   GUUGCAUA UAUA auc u
       |||||||   |||||||| |||| |||  
       CUCACUU   CAACGUAU AUgu ugg g
cuacauC       -UU        U    u   g 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
APAU02000040.1: 661467-661534 [+]

Database links

Mature egr-miR-2162-5p

Accession MIMAT0041181
Description Echinococcus granulosus egr-miR-2162-5p mature miRNA
Sequence 6 - AGUGGAUUUGUUGCAUAUUAUAC - 28
Evidence experimental
Illumina [1-2]

Mature egr-miR-2162-3p

Accession MIMAT0041182
Description Echinococcus granulosus egr-miR-2162-3p mature miRNA
Sequence 42 - UAUUAUGCAACUUUUCACUCC - 62
Evidence experimental
Illumina [1-2]

References

  1. PubMed ID: 25656283
    microRNA profiling in the zoonotic parasite Echinococcus canadensis using a high-throughput approach
    Macchiaroli N, Cucher M, Zarowiecki M, Maldonado L, Kamenetzky L, Rosenzvit MC
    Parasit Vectors (2015) 8:83

  2. PubMed ID: 25168356
    Genome-wide sequencing of small RNAs reveals a tissue-specific loss of conserved microRNA families in Echinococcus granulosus
    Bai Y, Zhang Z, Jin L, Kang H, Zhu Y, Zhang L, Li X, Ma F, Zhao L, Shi B, Li J, McManus DP, Zhang W, Wang S
    BMC Genomics (2014) 15:736