miRBase entry: egr-mir-281

Stem-loop egr-mir-281


Accession
MI0033110
Description
Echinococcus granulosus egr-mir-281 precursor miRNA

Literature search
1 open access papers mention egr-mir-281
(2 sentences)

Sequence

gggauAAGGAGGGCCCUUUAUGACCCUUGagaaauaaaucaaUGUCAUGGAGUUGCUCUCUAUAuccuc
((((((.(((((((.(((((((((..((((........)))).)))))))))..))))))).)))))).

Structure
-      A       -C         CC    gaa 
 gggauA GGAGGGC  CUUUAUGAC  UUGa   a
 |||||| |||||||  |||||||||  ||||    
 uccuAU UCUCUCG  GAGGUACUG  aacu   u
c      A       UU         -U    aaa 


Annotation confidence Not enough data
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Genome context
APAU02000006.1: 1258746-1258814 [-]

Database links

Mature egr-miR-281-5p

Accession MIMAT0041187
Description Echinococcus granulosus egr-miR-281-5p mature miRNA
Sequence 6 - AAGGAGGGCCCUUUAUGACCCUUG - 29
Evidence experimental
Illumina [1-2]

Mature egr-miR-281-3p

Accession MIMAT0041188
Description Echinococcus granulosus egr-miR-281-3p mature miRNA
Sequence 43 - UGUCAUGGAGUUGCUCUCUAUA - 64
Evidence experimental
Illumina [1-2]

References

  1. PubMed ID: 25656283
    microRNA profiling in the zoonotic parasite Echinococcus canadensis using a high-throughput approach
    Macchiaroli N, Cucher M, Zarowiecki M, Maldonado L, Kamenetzky L, Rosenzvit MC
    Parasit Vectors (2015) 8:83

  2. PubMed ID: 25168356
    Genome-wide sequencing of small RNAs reveals a tissue-specific loss of conserved microRNA families in Echinococcus granulosus
    Bai Y, Zhang Z, Jin L, Kang H, Zhu Y, Zhang L, Li X, Ma F, Zhao L, Shi B, Li J, McManus DP, Zhang W, Wang S
    BMC Genomics (2014) 15:736