miRBase entry: egr-mir-10233

Stem-loop egr-mir-10233


Accession
MI0033121
Description
Echinococcus granulosus egr-mir-10233 precursor miRNA


Sequence

uauugUUGCACAGCUUAGAGCUCUGUCugcuuuucgccuGCGGAGUGUCGGUGCUGUGCGAAAGUGAUaaacu
((((.(((((((((...(((((((((..((.....))..))))))).))...))))))))).)))).......

Structure
-------    g         UUA  -       Cu  u 
       uauu UUGCACAGC   GA GCUCUGU  gc u
       |||| |||||||||   || |||||||  || u
       GUGA AGCGUGUCG   CU UGAGGCG  cg u
ucaaaUA    A         UGG  G       uc  c 


Annotation confidence Not enough data
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Genome context
APAU02000032.1: 665609-665681 [-]

Database links

Mature egr-miR-10233-5p

Accession MIMAT0041209
Description Echinococcus granulosus egr-miR-10233-5p mature miRNA
Sequence 6 - UUGCACAGCUUAGAGCUCUGUC - 27
Evidence experimental
Illumina [1]

Mature egr-miR-10233-3p

Accession MIMAT0041210
Description Echinococcus granulosus egr-miR-10233-3p mature miRNA
Sequence 40 - GCGGAGUGUCGGUGCUGUGCGAAAGUGAU - 68
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25168356
    Genome-wide sequencing of small RNAs reveals a tissue-specific loss of conserved microRNA families in Echinococcus granulosus
    Bai Y, Zhang Z, Jin L, Kang H, Zhu Y, Zhang L, Li X, Ma F, Zhao L, Shi B, Li J, McManus DP, Zhang W, Wang S
    BMC Genomics (2014) 15:736