miRBase entry: egr-mir-10238

Stem-loop egr-mir-10238


Accession
MI0033126
Description
Echinococcus granulosus egr-mir-10238 precursor miRNA


Sequence

acgauGACUGGGUUGCAGGAAAGCGugaauaagugcuacauagagaacuuagucacgCAUACCCAAAGCCCAGUUCAucacc
..((((((((((((...((...((((((.(((((.((......)).))))).))))))...))...))))))).)))))...

Structure
-ac     -       GCA  AAA      a     g  ac 
   gauGA CUGGGUU   GG   GCGuga uaagu cu  a
   ||||| |||||||   ||   |||||| ||||| ||   
   cuACU GACCCGA   CC   Cgcacu auuca ga  u
cca     U       AAC  AUA      g     a  ga 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
APAU02000026.1: 124155-124236 [-]

Database links

Mature egr-miR-10238-5p

Accession MIMAT0041219
Description Echinococcus granulosus egr-miR-10238-5p mature miRNA
Sequence 6 - GACUGGGUUGCAGGAAAGCG - 25
Evidence experimental
Illumina [1]

Mature egr-miR-10238-3p

Accession MIMAT0041220
Description Echinococcus granulosus egr-miR-10238-3p mature miRNA
Sequence 58 - CAUACCCAAAGCCCAGUUCA - 77
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25168356
    Genome-wide sequencing of small RNAs reveals a tissue-specific loss of conserved microRNA families in Echinococcus granulosus
    Bai Y, Zhang Z, Jin L, Kang H, Zhu Y, Zhang L, Li X, Ma F, Zhao L, Shi B, Li J, McManus DP, Zhang W, Wang S
    BMC Genomics (2014) 15:736