miRBase entry: egr-mir-10239

Stem-loop egr-mir-10239


Accession
MI0033127
Description
Echinococcus granulosus egr-mir-10239 precursor miRNA


Sequence

caauuGUCCACGCAGCACAGCGGUCAcgaaugcugggCCGAUGAAUGCCACGUGGUCACguguu
....((.(((((..(((((.(((((.((.....))))))).))..)))..))))).))......

Structure
--caau  U     CA   --  G     A  a 
      uG CCACG  GCA  CA CGGUC cg a
      || |||||  |||  || ||||| || u
      AC GGUGC  CGU  GU GCCgg gu g
uugugC  U     AC   AA  A     -  c 


Annotation confidence Not enough data
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Genome context
APAU02000065.1: 138163-138226 [-]

Database links

Mature egr-miR-10239-5p

Accession MIMAT0041221
Description Echinococcus granulosus egr-miR-10239-5p mature miRNA
Sequence 6 - GUCCACGCAGCACAGCGGUCA - 26
Evidence experimental
Illumina [1]

Mature egr-miR-10239-3p

Accession MIMAT0041222
Description Echinococcus granulosus egr-miR-10239-3p mature miRNA
Sequence 38 - CCGAUGAAUGCCACGUGGUCAC - 59
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25168356
    Genome-wide sequencing of small RNAs reveals a tissue-specific loss of conserved microRNA families in Echinococcus granulosus
    Bai Y, Zhang Z, Jin L, Kang H, Zhu Y, Zhang L, Li X, Ma F, Zhao L, Shi B, Li J, McManus DP, Zhang W, Wang S
    BMC Genomics (2014) 15:736