miRBase entry: egr-mir-36b

Stem-loop egr-mir-36b


Accession
MI0033135
Description
Echinococcus granulosus egr-mir-36b precursor miRNA

Literature search
1 open access papers mention egr-mir-36b
(2 sentences)

Sequence

ucuagGAGUAAUUUCUAUCCGGUUGGuguuuuccagggaacacuaguguguccucuauguccaaggcaUCACCGGGUAGUUAUUACGCcucgg
.(.(((.(((((..(((((((((.((((((((.((((((.(((....)))))))...))...)))))))))))))))))..))))).))).).

Structure
u u   A     UU         U        --c  ---    a   u 
 c agG GUAAU  CUAUCCGGU GGuguuuu   ca   ggga cac a
 | ||| |||||  ||||||||| ||||||||   ||   |||| |||  
 g ucC CAUUA  GAUGGGCCA CUacggaa   gu   uccu gug g
g c   G     UU         -        ccu  auc    -   u 


Annotation confidence Not enough data
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Genome context
APAU02000003.1: 597050-597142 [+]

Database links

Mature egr-miR-36b-5p

Accession MIMAT0041237
Description Echinococcus granulosus egr-miR-36b-5p mature miRNA
Sequence 6 - GAGUAAUUUCUAUCCGGUUGG - 26
Evidence experimental
Illumina [1-2]

Mature egr-miR-36b-3p

Accession MIMAT0041238
Description Echinococcus granulosus egr-miR-36b-3p mature miRNA
Sequence 69 - UCACCGGGUAGUUAUUACGC - 88
Evidence experimental
Illumina [1-2]

References

  1. PubMed ID: 25656283
    microRNA profiling in the zoonotic parasite Echinococcus canadensis using a high-throughput approach
    Macchiaroli N, Cucher M, Zarowiecki M, Maldonado L, Kamenetzky L, Rosenzvit MC
    Parasit Vectors (2015) 8:83

  2. PubMed ID: 25168356
    Genome-wide sequencing of small RNAs reveals a tissue-specific loss of conserved microRNA families in Echinococcus granulosus
    Bai Y, Zhang Z, Jin L, Kang H, Zhu Y, Zhang L, Li X, Ma F, Zhao L, Shi B, Li J, McManus DP, Zhang W, Wang S
    BMC Genomics (2014) 15:736