Stem-loop egr-mir-10227e

Accession

MI0033139

Description

Echinococcus granulosus egr-mir-10227e precursor miRNA

Sequence

gaaggUGGCGCUUGGUUAUUCUACUGAuagccaaaagucAGUCGUAUAAUCAACGUGCCGCAcucac
((..(((((((((((((((.(.((((((........)))))).).)))))))).)))))))..))..

Structure

--  ag       -        U U      agc 
  ga  gUGGCGC UUGGUUAU C ACUGAu   c
  ||  ||||||| |||||||| | ||||||    
  cu  CGCCGUG AACUAAUA G UGAcug   a
ca  cA       C        U C      aaa 

Annotation confidence Not enough data

Genome context

APAU02000041.1: 46709-46775 [+]

Clustered miRNAs

5 other miRNAs are < 10 kb from egr-mir-10227e

Mature egr-miR-10227e-5p

• Accession: MIMAT0041245
• Description: Echinococcus granulosus egr-miR-10227e-5p mature miRNA
• Sequence: 6 - UGGCGCUUGGUUAUUCUACUGA - 27
• Evidence: experimental ; Illumina [1]

Mature egr-miR-10227e-3p

• Accession: MIMAT0041246
• Description: Echinococcus granulosus egr-miR-10227e-3p mature miRNA
• Sequence: 40 - AGUCGUAUAAUCAACGUGCCGCA - 62
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25168356
   Genome-wide sequencing of small RNAs reveals a tissue-specific loss of conserved microRNA families in Echinococcus granulosus
   Bai Y, Zhang Z, Jin L, Kang H, Zhu Y, Zhang L, Li X, Ma F, Zhao L, Shi B, Li J, McManus DP, Zhang W, Wang S
   BMC Genomics (2014) 15:736