miRBase entry: egr-mir-10252

Stem-loop egr-mir-10252


Accession
MI0033142
Description
Echinococcus granulosus egr-mir-10252 precursor miRNA


Sequence

caccgUACGUGCAUUUCAGCUCAUCUUcuccacugcuuggagUCUGAGGUGAAAAUGCGCGAAUUucucc
.......(((((((((((.((((....(((((.....)))))..)))).)).))))))))).........

Structure
--caccgUA         -  G    UCUU     c 
         CGUGCAUUU CA CUCA    cucca u
         ||||||||| || ||||    ||||| g
         GCGCGUAAA GU GAGU    gaggu c
ccucuUUAA         A  G    --CU     u 


Annotation confidence Not enough data
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Genome context
APAU02000015.1: 1328238-1328307 [-]

Database links

Mature egr-miR-10252-5p

Accession MIMAT0041251
Description Echinococcus granulosus egr-miR-10252-5p mature miRNA
Sequence 6 - UACGUGCAUUUCAGCUCAUCUU - 27
Evidence experimental
Illumina [1]

Mature egr-miR-10252-3p

Accession MIMAT0041252
Description Echinococcus granulosus egr-miR-10252-3p mature miRNA
Sequence 43 - UCUGAGGUGAAAAUGCGCGAAUU - 65
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25168356
    Genome-wide sequencing of small RNAs reveals a tissue-specific loss of conserved microRNA families in Echinococcus granulosus
    Bai Y, Zhang Z, Jin L, Kang H, Zhu Y, Zhang L, Li X, Ma F, Zhao L, Shi B, Li J, McManus DP, Zhang W, Wang S
    BMC Genomics (2014) 15:736