miRBase entry: egr-mir-10257

Stem-loop egr-mir-10257


Accession
MI0033148
Description
Echinococcus granulosus egr-mir-10257 precursor miRNA


Sequence

ccagcGGUGCCAUUAGUGUGAUAGGcucagcguugaucuauucaacaucagccUUCAUGCGCUUGGAGCGUgcaga
...(((((.(((...((((((.(((((....(((((.....)))))...)))))))))))...))).)).)))...

Structure
cca   -  G   UUA      U     cagc     u 
   gcG GU CCA   GUGUGA AGGcu    guuga c
   ||| || |||   |||||| |||||    ||||| u
   cgU CG GGU   CGUACU Uccga    caacu a
aga   G  A   UCG      -     -cua     u 


Annotation confidence Not enough data
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Genome context
APAU02000186.1: 30323-30398 [-]

Database links

Mature egr-miR-10257-5p

Accession MIMAT0041263
Description Echinococcus granulosus egr-miR-10257-5p mature miRNA
Sequence 6 - GGUGCCAUUAGUGUGAUAGG - 25
Evidence experimental
Illumina [1]

Mature egr-miR-10257-3p

Accession MIMAT0041264
Description Echinococcus granulosus egr-miR-10257-3p mature miRNA
Sequence 54 - UUCAUGCGCUUGGAGCGU - 71
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25168356
    Genome-wide sequencing of small RNAs reveals a tissue-specific loss of conserved microRNA families in Echinococcus granulosus
    Bai Y, Zhang Z, Jin L, Kang H, Zhu Y, Zhang L, Li X, Ma F, Zhao L, Shi B, Li J, McManus DP, Zhang W, Wang S
    BMC Genomics (2014) 15:736