miRBase entry: egr-mir-10258

Stem-loop egr-mir-10258


Accession
MI0033149
Description
Echinococcus granulosus egr-mir-10258 precursor miRNA


Sequence

gcuuuUGCCUACUUCCUCAGCAAAAUUGGgagaaaguaaugcgauguugucgucguggccacauucgccAUAUUGUUGUAGAAGGCGGAAAaguug
((((((.((..((((..((((((...(((..(((.((..(((((((....)))))))...)).))).)))..))))))..))))..))))))))..

Structure
--      G  UA    CU      AAU   ga   a  -aa       u 
  gcuuuU CC  CUUC  CAGCAA   UGG  gaa gu   ugcgaug u
  |||||| ||  ||||  ||||||   |||  ||| ||   |||||||  
  ugaAAA GG  GAAG  GUUGUU   Acc  cuu ca   gugcugc g
gu      -  CG    AU      -AU   -g   a  ccg       u 


Annotation confidence Not enough data
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Genome context
APAU02000021.1: 673608-673703 [+]

Database links

Mature egr-miR-10258-5p

Accession MIMAT0041265
Description Echinococcus granulosus egr-miR-10258-5p mature miRNA
Sequence 6 - UGCCUACUUCCUCAGCAAAAUUGG - 29
Evidence experimental
Illumina [1]

Mature egr-miR-10258-3p

Accession MIMAT0041266
Description Echinococcus granulosus egr-miR-10258-3p mature miRNA
Sequence 70 - AUAUUGUUGUAGAAGGCGGAAA - 91
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25168356
    Genome-wide sequencing of small RNAs reveals a tissue-specific loss of conserved microRNA families in Echinococcus granulosus
    Bai Y, Zhang Z, Jin L, Kang H, Zhu Y, Zhang L, Li X, Ma F, Zhao L, Shi B, Li J, McManus DP, Zhang W, Wang S
    BMC Genomics (2014) 15:736