miRBase entry: egr-mir-10261

Stem-loop egr-mir-10261


Accession
MI0033152
Description
Echinococcus granulosus egr-mir-10261 precursor miRNA


Sequence

aguggCCUCUCUAUCCCUUUUCACGUUAguauuguaugcucuaccaguaugcugugacuauACGGAUUUUGGCGGAGUUGGGGAGGCAcagca
.(((.(((((((((((((..((.(((((((...(((((((.....)))))))....)))).)))))....)).)))..)))))))))))....

Structure
---a   g        --   -  --UU  A   -    -auu       c 
    gug CCUCUCUA  UCC CU    UC CGU UAgu    guaugcu u
    ||| ||||||||  ||| ||    || ||| ||||    ||||||| a
    cAC GGAGGGGU  AGG GG    AG GCA auca    cguauga c
acga   -        UG   C  UUUU  -   u    gugu       c 


Annotation confidence Not enough data
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Genome context
APAU02000003.1: 1901528-1901620 [+]

Database links

Mature egr-miR-10261-5p

Accession MIMAT0041271
Description Echinococcus granulosus egr-miR-10261-5p mature miRNA
Sequence 6 - CCUCUCUAUCCCUUUUCACGUUA - 28
Evidence experimental
Illumina [1]

Mature egr-miR-10261-3p

Accession MIMAT0041272
Description Echinococcus granulosus egr-miR-10261-3p mature miRNA
Sequence 62 - ACGGAUUUUGGCGGAGUUGGGGAGGCA - 88
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25168356
    Genome-wide sequencing of small RNAs reveals a tissue-specific loss of conserved microRNA families in Echinococcus granulosus
    Bai Y, Zhang Z, Jin L, Kang H, Zhu Y, Zhang L, Li X, Ma F, Zhao L, Shi B, Li J, McManus DP, Zhang W, Wang S
    BMC Genomics (2014) 15:736