miRBase entry: egr-mir-10275

Stem-loop egr-mir-10275


Accession
MI0033166
Description
Echinococcus granulosus egr-mir-10275 precursor miRNA


Sequence

CGGACAGUGCACGGGUAUUUUgcuuugccugugcgucacgcgccgggggcaggggcagggcggcGGUGCCCACAUUGGACGAC
((..(((((...((((((((((((((((((.(((.((.((...)))).))).))))))))))).))))))).)))))..))..

Structure
--  GA     CAC       -           g   g  a  c 
  CG  CAGUG   GGGUAUU UUgcuuugccu ugc uc cg  
  ||  |||||   ||||||| ||||||||||| ||| || || g
  GC  GUUAC   CCCGUGG ggcgggacggg acg gg gc  
CA  AG     --A       c           g   g  -  c 


Annotation confidence Not enough data
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Genome context
APAU02000007.1: 1097831-1097913 [+]

Database links

Mature egr-miR-10275-5p

Accession MIMAT0041299
Description Echinococcus granulosus egr-miR-10275-5p mature miRNA
Sequence 1 - CGGACAGUGCACGGGUAUUUU - 21
Evidence experimental
Illumina [1]

Mature egr-miR-10275-3p

Accession MIMAT0041300
Description Echinococcus granulosus egr-miR-10275-3p mature miRNA
Sequence 65 - GGUGCCCACAUUGGACGAC - 83
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25168356
    Genome-wide sequencing of small RNAs reveals a tissue-specific loss of conserved microRNA families in Echinococcus granulosus
    Bai Y, Zhang Z, Jin L, Kang H, Zhu Y, Zhang L, Li X, Ma F, Zhao L, Shi B, Li J, McManus DP, Zhang W, Wang S
    BMC Genomics (2014) 15:736