miRBase entry: egr-mir-10279

Stem-loop egr-mir-10279


Accession
MI0033170
Description
Echinococcus granulosus egr-mir-10279 precursor miRNA


Sequence

ACGUUCGCGCACGUCCAGCGGagauccugccaucacgguguuaggacucuUCUGACAUGCAUGAACGAGU
.((((((.(((.(((.((.((((.(((((.(((....))).))))))))).))))).))).))))))...

Structure
--A      C   C   C  C    a     c   c 
   CGUUCG GCA GUC AG GGag uccug cau a
   |||||| ||| ||| || |||| ||||| |||  
   GCAAGU CGU CAG UC ucuc aggau gug c
UGA      A   A   -  U    -     u   g 


Annotation confidence Not enough data
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Genome context
APAU02000004.1: 878205-878274 [-]

Database links

Mature egr-miR-10279-5p

Accession MIMAT0041307
Description Echinococcus granulosus egr-miR-10279-5p mature miRNA
Sequence 1 - ACGUUCGCGCACGUCCAGCGG - 21
Evidence experimental
Illumina [1]

Mature egr-miR-10279-3p

Accession MIMAT0041308
Description Echinococcus granulosus egr-miR-10279-3p mature miRNA
Sequence 51 - UCUGACAUGCAUGAACGAGU - 70
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25168356
    Genome-wide sequencing of small RNAs reveals a tissue-specific loss of conserved microRNA families in Echinococcus granulosus
    Bai Y, Zhang Z, Jin L, Kang H, Zhu Y, Zhang L, Li X, Ma F, Zhao L, Shi B, Li J, McManus DP, Zhang W, Wang S
    BMC Genomics (2014) 15:736