Stem-loop egr-mir-10284

Accession

MI0033175

Description

Echinococcus granulosus egr-mir-10284 precursor miRNA

Sequence

CGGAGGGGUCUGGGAGCUUCUGgcauggcccaagggucauaaugcugggcaaGAAGUACAAUGACCGUGUCCUUUAAU
.(((.(((((...(.(((((((((((((((....)))))...)))).....)))))).)...)))).).)))......

Structure

-----C   G -    UGG A      -----    ---     c 
      GGA G GGUC   G GCUUCU     Ggca   uggcc a
      ||| | ||||   | ||||||     ||||   |||||  
      CCU U CCAG   C UGAAGa     ucgu   acugg a
UAAUUU   G G    UAA A      acggg    aau     g 

Annotation confidence Not enough data

Genome context

APAU02000012.1: 987316-987393 [+]

Mature egr-miR-10284-5p

• Accession: MIMAT0041317
• Description: Echinococcus granulosus egr-miR-10284-5p mature miRNA
• Sequence: 1 - CGGAGGGGUCUGGGAGCUUCUG - 22
• Evidence: experimental ; Illumina [1]

Mature egr-miR-10284-3p

• Accession: MIMAT0041318
• Description: Echinococcus granulosus egr-miR-10284-3p mature miRNA
• Sequence: 53 - GAAGUACAAUGACCGUGUCCUUUAAU - 78
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25168356
   Genome-wide sequencing of small RNAs reveals a tissue-specific loss of conserved microRNA families in Echinococcus granulosus
   Bai Y, Zhang Z, Jin L, Kang H, Zhu Y, Zhang L, Li X, Ma F, Zhao L, Shi B, Li J, McManus DP, Zhang W, Wang S
   BMC Genomics (2014) 15:736