miRBase entry: egr-mir-10290

Stem-loop egr-mir-10290


Accession
MI0033181
Description
Echinococcus granulosus egr-mir-10290 precursor miRNA


Sequence

AGGUACUAGGGCUACUGGCAUGgccugaaggcuagcccacccggugugguacaauggccgAGCCAAAAGUGGUUCUUUACCUAA
(((((..((((((((((((.(((((.....((((..((....))..)))).....))))).)))...))))))))).)))))..

Structure
--     CU         ---   A     ugaag    gc  a 
  AGGUA  AGGGCUACU   GGC UGgcc     gcua  cc c
  |||||  |||||||||   ||| |||||     ||||  ||  
  UCCAU  UCUUGGUGA   CCG gccgg     uggu  gg c
AA     -U         AAA   A     uaaca    gu  c 


Annotation confidence Not enough data
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Genome context
APAU02000020.1: 430704-430787 [-]

Database links

Mature egr-miR-10290-5p

Accession MIMAT0041329
Description Echinococcus granulosus egr-miR-10290-5p mature miRNA
Sequence 1 - AGGUACUAGGGCUACUGGCAUG - 22
Evidence experimental
Illumina [1]

Mature egr-miR-10290-3p

Accession MIMAT0041330
Description Echinococcus granulosus egr-miR-10290-3p mature miRNA
Sequence 61 - AGCCAAAAGUGGUUCUUUACCUAA - 84
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25168356
    Genome-wide sequencing of small RNAs reveals a tissue-specific loss of conserved microRNA families in Echinococcus granulosus
    Bai Y, Zhang Z, Jin L, Kang H, Zhu Y, Zhang L, Li X, Ma F, Zhao L, Shi B, Li J, McManus DP, Zhang W, Wang S
    BMC Genomics (2014) 15:736